PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_34CCC8525.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 141aa    MW: 16182.5 Da    PI: 8.9995
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_34CCC8525.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.67.3e-121796190
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                           +fYn Y+ e GF +r  ks+ +  n +  +++ vC + gk+  e+++         + r++C   +++ ++kd+ w++++ +  HnH+l+
  Traes_5DL_34CCC8525.1 17 DFYNLYSWEKGFGIRYGKSRLN-VNMSKCMQEIVCGCAGKPIVENTR---------SCRCECPSLIRLLRTKDNGWYIAEHRDGHNHALS 96
                           6*****************9998.666688999*******99887555.........99******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-81796IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVPKIGTSFD TLGEAYDFYN LYSWEKGFGI RYGKSRLNVN MSKCMQEIVC GCAGKPIVEN  60
TRSCRCECPS LIRLLRTKDN GWYIAEHRDG HNHALSQTYG QTIHWPSHKH IDVYSKDLVK  120
QLRQNNVNLS KVYSIIGSFF G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2955771e-135JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.13e-72PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5FS181e-104W5FS18_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.16e-72(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-10FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]